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Design and Implementation of a Laboratory Information Management System (LIMS)
Genetta Soft AB, Uppsala
The dept of pharmaceutical biosciences, div of pharmacology, is developing tools for rational drug design using a novel method called
Proteochemometrics. The aim is to predict interactions for drug
candidates with known receptors using computer models. The process
requires handling of large amounts of data, which today is done manually
The department wants to implement a high throughput information management system with databases, barcoded sample handling, automated
information exchange from laboratory instruments, and user-friendly
The project is a collaboration with Genetta Soft AB, a recently started
company specializing in software solutions for biological and
Depending of project progress and status at the end of the semester,there might be an opportunity for a summer job.
1. Design a general LIMS ¿ laboratory information management system
to store, manage, and retrieve information regarding the
resources, analyses, and results in a laboratory.
2. Configure and implement a LIMS for the dept of pharmaceutical
pharmacology. Interface against existing lab instruments.
3. Acquire and set up hardware (barcode readers, label writers,
4. Test the implemented system
2 positions are available
Due to the expected workload and crosscientific nature of the project we
require two persons; one with more biological/laboratory knowledge, and one with a background in computer science. However, it is one project and extensive collaboration between the two students will be a necessity. The two positions are described below.
1. Information management and database design
- Database knowledge
- Some java knowledge
- Experience of laboratory work
2. Interface design and implementation
- Experienced java skills
- Database knowledge
- Eclipse experience is an advantage
Operating system: We prefer Linux but Windows is also acceptable
- Eclipse IDE
- Hibernate as OO-relational mapping
- Junit for testing
- Ability to work independently with deadlines
Eclipse and RCP
Articles published at the department
PhD student Ola Spjuth ([email protected]) tel: 018-471 4281
PhD student Martin Eklund ([email protected]) tel: 018-471 4281
Prof. Jarl S. Wikberg ([email protected]) tel: 018-471 4238
Informationen om uppsatsförslag är hämtad från Nationella Exjobb-poolen.